Table 2 Identification of nearest nucleotide allele match in seM database for strains of Streptococcus equi used in this project
From: Lineages of Streptococcus equi ssp. equi in the Irish equine industry
Group | Nucleotide allele match in seM MLST database | Number of recorded UK isolates | Outbreak years |
|---|---|---|---|
A | 7 | 33 | 2004-2010 |
B | 17 | 0 | |
C | 6 | 103 | 2003-2010 |
D | 48 | 4 | 2006-2010 |
E | 59 | 8 | 2007-2010 |
F | 16 | 26 | 2006-2008 |
G | 9 | 161 | 2003-2010 |
H | 46 | 13 | 2006-2010 |
I | Nearest allele 6 - Identity 99.69% Differences: 1: nt 58: A → G | ||
J | 51 | 8 | 2007-2010 |
K | 9 | 161 | 2003-2010 |
L | 9 | 161 | 2003-2010 |
M | 44 | 46 | 2006-2007 |
Single isolates | |||
EI3 | 52 | 3 | 2008-2010 |
EI4 | Nearest allele 17 - Identity 99.08% Differences: 3: nt 74: G → A, nt 239: C → T, nt 268: G→ A | ||
EI5 | 6 | 103 | 2003-2010 |
EI8 | Partial match: allele 69 – Identity 99.09% Gaps: 1, three base insertion | ||
UK11 | 8 | 3 | 1999-2003 |
UK21 | 68 | 1 | 2003 |
Se4047 | 3 | 4 | 1990-2008 |