Primer | Broad function (gene function) | Sequence (5’ to 3’) | Referance |
---|---|---|---|
invA | Host recognition/invasion (type III secretion system appratus) | F-CTGGCGGTGGGTTTTGTTGTCTTCTCTATT | Skyberg et al., (2006) [34] |
R-AGTTTCTCCCCCTCTTCATGCGTTACCC | |||
orgA | Host recognition/invasion (type III secretion system appratus) | F-TTTTTGGCAATGCATCAGGGAACA | Skyberg et al., (2006) [34] |
R-GGCGAAAGCGGGGACGGTATT | |||
prgH | Host recognition/invasion (type III secretion system appratus) | F-GCCCGAGCAGCCTGAGAAGTTAGAAA | Skyberg et al., (2006) [34] |
R-TGAAATGAGCGCCCCTTGAGCCAGTC | |||
sopB | Host recognition/invasion (type III secretion system appratus) | F-CGGACCGGCCAGCAACAAAACAAGAAGAAG | Skyberg et al., (2006) [34] |
R-TAGTGATGCCCGTTATGCGTGAGTGTATT | |||
tolC | Host recognition/invasion (outer membrane channel protein) | F-TACCCAGGCGCAAAAAGAGGCTATC | Skyberg et al., (2006) [34] |
R-CCGCGTTATCCAGGTTGTTGC | |||
sopE | Host recognition/invasion (invasion-associated secreted protein) | F-CATAGCGCCTTTTCTTCAGG | Suez et al., (2013) [35] |
R-ATGCCTGCTGATGTTGATTG | |||
sseI | Host recognition/invasion (type III secretion system effector protein) | F-CGCCATCATCAGTAACCGCC | Suez et al., (2013) [35] |
R-CTGCTGACCACATCCTCCC | |||
ssek3 | Host recognition/invasion (type III secretion system effector protein) | F-TATCAATCTCAAATCATGG | Suez et al., (2013) [35] |
R-CGCGTTTATATCATACGTTTGC | |||
sspH1 | Host recognition/invasion (type III secretion system effector protein) | F-GGTCACAGGACACGTTCTACG | Suez et al., (2013) [35] |
R-GCGCTTCTTCGTAATTTTCC | |||
cdtB | Host recognition/invasion (toxin-like protein) | F-ACAACTGTCGCATCTCGCCCCGTCATT | Skyberg et al., (2006) [34] |
R-CAATTTGCGTGGGTTCTGTAGGTGCGAGT | |||
hlyE | Host recognition/invasion (hemolysis-inducing protein) | F-GCGTGATTGAAGGGAAATTG | Suez et al., (2013) [35] |
R-CGAAAAGCGTCTTCTTACCG | |||
lpfC | Host recognition/invasion (fimbrial protein) | F-GCCCCGCCTGAAGCCTGTGTTGC | Skyberg et al., (2006) [34] |
R-AGGTCGCCGCTGTTTGAGGTTGGATA | |||
pefA | Host recognition/invasion (fimbial protein) | F-TAAGCCACTGCGAAAGATGC | Suez et al., (2013) [35] |
R-GCGTGAACTCCAAAAACCCG | |||
tcfA | Host recognition/invasion (fimbrial protein) | F-TCGCTATGTTTGCATGTGGT | Suez et al., (2013) [35] |
R-TTCAGGAACAGCCTCGAAGT | |||
span | Entry into nonphagocytic cells (type III secretion system appratus) | F-AAAAGCCGTGGAATCCGTTAGTGAAGT | Skyberg et al., (2006) [34] |
R-CAGCGCTGGGGATTACCGTTTTG | |||
sipB | Entry into nonphagocytic cells (translocation machinery component) | F-GGACGCCGCCCGGGAAAAACTCTC | Skyberg et al., (2006) [34] |
R-ACACTCCCGTCGCCGCCTTCACAA | |||
spiA | Survival within macrophage (outer membrane secretory protein) | F-CCAGGGGTCGTTAGTGTATTGCGTGAGATG | Skyberg et al., (2006) [34] |
R-CGCGTAACAAAGAACCCGTAGTGATGGATT | |||
msgA | Survival within macrophage (macrophage survival protein) | F-GCCAGGCGCACGCGAAATCATCC | Skyberg et al., (2006) [34] |
R-GCGACCAGCCACATATCAGCCTCTTCAAAC | |||
pagC | Survival within macrophage (virulence membrane protein) | F-CGCCTTTTCCGTGGGGTATGC | Skyberg et al., (2006) [34] |
R-GAAGCCGTTTATTTTTGTAGAGGAGATGTT | |||
sodC | Survival within macrophage (periplasmic Cu/Zn superoxide dismutase) | F-ATGACACCACAGGCAAAACG | Suez et al., (2013) [35] |
R-AGATGAACGATGCCCTGTCC | |||
gatC | Growth within host (PTS galactitol transporter subunit IIC) | F-ATTGGTATCGGCTTCGTGGG | Suez et al., (2013) [35] |
R-ATCCCCAGCCAGTATGAACC | |||
spvB | Growth within host (ADP-ribosylating toxin) | F-CTATCAGCCCCGCACGGAGAGCAGTTTTTA | Skyberg et al., (2006) [34]. |
R-GGAGGAGGCGGTGGCGGTGGCATCATA | |||
sitC | Iron acquisition (permease) | F-CAGTATATGCTCAACGCGATGTGGGTCTCC | Skyberg et al., (2006) [34] |
R-CGGGGCGAAAATAAAGGCTGTGATGAAC | |||
iron | Iron acquisition (sidrophore) | F-ACTGGCACGGCTCGCTGTCGCTCTAT | Skyberg et al., (2006) [34] |
R-CGCTTTACCGCCGTTCTGCCACTGC | |||
sifA | Filamentous structure formation (secreted effector protein) | F-TTTGCCGAACGCGCCCCCACACG | Skyberg et al., (2006) [34] |
R-GTTGCCTTTTCTTGCGCTTTCCACCCATCT | |||
STM 2759 | Putative dipeptice/oligopetide/nikel ABC-type transport systems | F-ACCATTTTCACCTGGGCTCC | Suez et al., (2013) [35] |
R-CGTTCAGGTTTTGTCGCTGG |