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Table 2 Primers used in PCR for detection of virulence genes in antimicrobial resistant non-typhoidal Salmonella

From: Molecular characterization of antimicrobial resistant non-typhoidal Salmonella from poultry industries in Korea

Primer

Broad function (gene function)

Sequence (5’ to 3’)

Referance

invA

Host recognition/invasion (type III secretion system appratus)

F-CTGGCGGTGGGTTTTGTTGTCTTCTCTATT

Skyberg et al., (2006) [34]

R-AGTTTCTCCCCCTCTTCATGCGTTACCC

orgA

Host recognition/invasion (type III secretion system appratus)

F-TTTTTGGCAATGCATCAGGGAACA

Skyberg et al., (2006) [34]

R-GGCGAAAGCGGGGACGGTATT

prgH

Host recognition/invasion (type III secretion system appratus)

F-GCCCGAGCAGCCTGAGAAGTTAGAAA

Skyberg et al., (2006) [34]

R-TGAAATGAGCGCCCCTTGAGCCAGTC

sopB

Host recognition/invasion (type III secretion system appratus)

F-CGGACCGGCCAGCAACAAAACAAGAAGAAG

Skyberg et al., (2006) [34]

R-TAGTGATGCCCGTTATGCGTGAGTGTATT

tolC

Host recognition/invasion (outer membrane channel protein)

F-TACCCAGGCGCAAAAAGAGGCTATC

Skyberg et al., (2006) [34]

R-CCGCGTTATCCAGGTTGTTGC

sopE

Host recognition/invasion (invasion-associated secreted protein)

F-CATAGCGCCTTTTCTTCAGG

Suez et al., (2013) [35]

R-ATGCCTGCTGATGTTGATTG

sseI

Host recognition/invasion (type III secretion system effector protein)

F-CGCCATCATCAGTAACCGCC

Suez et al., (2013) [35]

R-CTGCTGACCACATCCTCCC

ssek3

Host recognition/invasion (type III secretion system effector protein)

F-TATCAATCTCAAATCATGG

Suez et al., (2013) [35]

R-CGCGTTTATATCATACGTTTGC

sspH1

Host recognition/invasion (type III secretion system effector protein)

F-GGTCACAGGACACGTTCTACG

Suez et al., (2013) [35]

R-GCGCTTCTTCGTAATTTTCC

cdtB

Host recognition/invasion (toxin-like protein)

F-ACAACTGTCGCATCTCGCCCCGTCATT

Skyberg et al., (2006) [34]

R-CAATTTGCGTGGGTTCTGTAGGTGCGAGT

hlyE

Host recognition/invasion (hemolysis-inducing protein)

F-GCGTGATTGAAGGGAAATTG

Suez et al., (2013) [35]

R-CGAAAAGCGTCTTCTTACCG

lpfC

Host recognition/invasion (fimbrial protein)

F-GCCCCGCCTGAAGCCTGTGTTGC

Skyberg et al., (2006) [34]

R-AGGTCGCCGCTGTTTGAGGTTGGATA

pefA

Host recognition/invasion (fimbial protein)

F-TAAGCCACTGCGAAAGATGC

Suez et al., (2013) [35]

R-GCGTGAACTCCAAAAACCCG

tcfA

Host recognition/invasion (fimbrial protein)

F-TCGCTATGTTTGCATGTGGT

Suez et al., (2013) [35]

R-TTCAGGAACAGCCTCGAAGT

span

Entry into nonphagocytic cells (type III secretion system appratus)

F-AAAAGCCGTGGAATCCGTTAGTGAAGT

Skyberg et al., (2006) [34]

R-CAGCGCTGGGGATTACCGTTTTG

sipB

Entry into nonphagocytic cells (translocation machinery component)

F-GGACGCCGCCCGGGAAAAACTCTC

Skyberg et al., (2006) [34]

R-ACACTCCCGTCGCCGCCTTCACAA

spiA

Survival within macrophage (outer membrane secretory protein)

F-CCAGGGGTCGTTAGTGTATTGCGTGAGATG

Skyberg et al., (2006) [34]

R-CGCGTAACAAAGAACCCGTAGTGATGGATT

msgA

Survival within macrophage (macrophage survival protein)

F-GCCAGGCGCACGCGAAATCATCC

Skyberg et al., (2006) [34]

R-GCGACCAGCCACATATCAGCCTCTTCAAAC

pagC

Survival within macrophage (virulence membrane protein)

F-CGCCTTTTCCGTGGGGTATGC

Skyberg et al., (2006) [34]

R-GAAGCCGTTTATTTTTGTAGAGGAGATGTT

sodC

Survival within macrophage (periplasmic Cu/Zn superoxide dismutase)

F-ATGACACCACAGGCAAAACG

Suez et al., (2013) [35]

R-AGATGAACGATGCCCTGTCC

gatC

Growth within host (PTS galactitol transporter subunit IIC)

F-ATTGGTATCGGCTTCGTGGG

Suez et al., (2013) [35]

R-ATCCCCAGCCAGTATGAACC

spvB

Growth within host (ADP-ribosylating toxin)

F-CTATCAGCCCCGCACGGAGAGCAGTTTTTA

Skyberg et al., (2006) [34].

R-GGAGGAGGCGGTGGCGGTGGCATCATA

sitC

Iron acquisition (permease)

F-CAGTATATGCTCAACGCGATGTGGGTCTCC

Skyberg et al., (2006) [34]

R-CGGGGCGAAAATAAAGGCTGTGATGAAC

iron

Iron acquisition (sidrophore)

F-ACTGGCACGGCTCGCTGTCGCTCTAT

Skyberg et al., (2006) [34]

R-CGCTTTACCGCCGTTCTGCCACTGC

sifA

Filamentous structure formation (secreted effector protein)

F-TTTGCCGAACGCGCCCCCACACG

Skyberg et al., (2006) [34]

R-GTTGCCTTTTCTTGCGCTTTCCACCCATCT

STM 2759

Putative dipeptice/oligopetide/nikel ABC-type transport systems

F-ACCATTTTCACCTGGGCTCC

Suez et al., (2013) [35]

R-CGTTCAGGTTTTGTCGCTGG