Ridpath JF, Bolin SR, Dubovi EJ. Segregation of BVDV into Genotypes. Virology. 1994;205:66–74.
Article
CAS
PubMed
Google Scholar
Drew TW, Sandvik T, Wakeley P, Jones T, Howard P. BVD virus genotype 2 detected in British cattle. Vet Rec. 2002;151:551.
CAS
PubMed
Google Scholar
Vilcek S, Paton DJ, Durkovic B, Strojny L, Ibata G, Moussa A, Loitsch A, Rossmanith W, Vega S, Scicluna MT, Palfi V. Bovine viral diarrhoea virus genotype 1 can be separated into at least eleven genetic groups. Arch Virol. 2001;146:99–115.
Article
CAS
PubMed
Google Scholar
Jackova A, Novackova M, Pelletier C, Audeval C, Gueneau E, Haffar A, Petit E, Rehby L, Vilcek S. The extended genetic diversity of BVDV-1: Typing of BVDV isolates from France. Vet Res Commun. 2008;32:7–11.
Article
CAS
PubMed
Google Scholar
Nagai M, Hayashi M, Itou M, Fukutomi T, Akashi H, Kida H, Sakoda Y. Identification of new genetic subtypes of bovine viral diarrhea virus genotype 1 isolated in Japan. Virus Genes. 2008;36:135–9.
Article
CAS
PubMed
Google Scholar
Yeşilbağ K, Förster C, Ozyiğit MO, Alpay G, Tuncer P, Thiel H-J, König M. Characterisation of bovine viral diarrhoea virus (BVDV) isolates from an outbreak with haemorrhagic enteritis and severe pneumonia. Vet Microbiol. 2014;169:42–9.
Article
PubMed
Google Scholar
Becher P, Orlich M, Shannon AD, Horner G, Konig M, Thiel HJ. Phylogenetic analysis of pestiviruses from domestic and wild ruminants. J Gen Virol. 1997;78:1357–66.
Article
CAS
PubMed
Google Scholar
Flores EF, Ridpath JF, Weiblen R, Vogel FSF, Gil LHVG. Phylogenetic analysis of Brazilian bovine viral diarrhea virus type 2 (BVDV-2) isolates: evidence for a subgenotype within BVDV-2. Virus Res. 2002;87:51–60.
Article
CAS
PubMed
Google Scholar
Giangaspero M, Harasawa R, Weber L, Belloli A. Genoepidemiological evaluation of Bovine viral diarrhea virus 2 species based on secondary structures in the 5 ’ untranslated region. J Vet Med Sci. 2008;70:571–80.
Article
CAS
PubMed
Google Scholar
Liu L, Xia H, Wahlberg N, Belak S, Baule C. Phylogeny, classification and evolutionary insights into pestiviruses. Virology. 2009;385:351–7.
Article
CAS
PubMed
Google Scholar
Schirrmeier H, Strebelow G, Depner K, Hoffmann B, Beer M. Genetic and antigenic characterization of an atypical pestivirus isolate, a putative member of a novel pestivirus species. J Gen Virol. 2004;85(Pt 12):3647–52.
Article
CAS
PubMed
Google Scholar
Stalder HP, Meier P, Pfaffen G, Wageck-Canal C, Rüfenacht J, Schaller P, Bachofen C, Marti S, Vogt HR, Peterhans E. Genetic heterogeneity of pestiviruses of ruminants in Switzerland. Prev Vet Med. 2005;72:37–41.
Article
CAS
PubMed
Google Scholar
Stahl K, Kampa J, Alenius S, Wadman AP, Baule C, Aiumlamai S, Belak S. Natural infection of cattle with an atypical “HoBi”-like pestivirus - Implications for BVD control and for the safety of biological products. Vet Res. 2007;38:517–23.
Article
PubMed
Google Scholar
Decaro N, Lucente MS, Mari V, Cirone F, Cordioli P, Camero M, Sciarretta R, Losurdo M, Lorusso E, Buonavoglia C. Atypical pestivirus and severe respiratory disease in calves, Europe. Emerg Infect Dis. 2011;17:1549–52.
Article
PubMed
PubMed Central
Google Scholar
Mishra N, Rajukumar K, Pateriya A, Kumar M, Dubey P, Behera SP, Verma A, Bhardwaj P, Kulkarni DD, Vijaykrishna D, Reddy ND. Identification and molecular characterization of novel and divergent HoBi-like pestiviruses from naturally infected cattle in India. Vet Microbiol. 2014;174:239–46.
Article
CAS
PubMed
Google Scholar
Kirkland PD, Frost M, Finlaison DS, King KR, Ridpath JF, Gu X. Identification of a novel virus in pigs-Bungowannah virus: A possible new species of pestivirus. Virus Res. 2007;129:26–34.
Article
CAS
PubMed
Google Scholar
Peterhans E, Schweizer M. Pestiviruses: How to outmaneuver your hosts. Vet Microbiol. 2010;142:18–25.
Article
PubMed
Google Scholar
Vilcek S, Herring AJ, Herring JA, Nettleton PF, Lowings JP, Paton DJ. Pestiviruses isolated from pigs, cattle and sheep can be allocated into at least 3 genogroups using polymerase chain-reaction and restriction-endoniclease analysis. Arch Virol. 1994;136:309–23.
Article
CAS
PubMed
Google Scholar
Letellier C, Kerkhofs P. Real-time PCR for simultaneous detection and genotyping of bovine viral diarrhea virus. J Virol Methods. 2003;114:21–7.
Article
CAS
PubMed
Google Scholar
Guelbenzu-Gonzalo MP: Benchmarking and control of bovine viral diarrhoea in Northern Ireland dairy and suckler herds. Thesis, Queens University Belfast. 2015.
Pellerin C, Van Den Hurk J, Lecomte J, Tijssen P. Identification of a new group of Bovine Viral Diarrhea Virus strains associated with severe outbreaks and high mortality. Virology. 1994;203:260–8.
Article
CAS
PubMed
Google Scholar
Van Campen H, Vorpahl P, Huzurbazar S, Edwards J, Cavender J. A Case Report: Evidence for Type 2 Bovine Viral Diarrhea Virus (BVDV)-Associated Disease in Beef Herds Vaccinated with a Modified-Live Type 1 BVDV Vaccine. J Vet Diagnostic Investig. 2000;12:263–5.
Article
Google Scholar
Fulton RW, Ridpath JF, Confer AW, Saliki JT, Burge LJ, Payton ME. Bovine viral diarrhoea virus antigenic diversity: impact on disease and vaccination programmes. Biologicals. 2003;31:89–95.
Article
PubMed
Google Scholar
Aguirre IM, Quezada MP, Celedón MO. Antigenic variability in bovine viral diarrhea virus (BVDV) isolates from alpaca (Vicugna pacos), llama (Lama glama) and bovines in Chile. Vet Microbiol. 2014;168:324–30.
Article
CAS
PubMed
Google Scholar
Pecora A, Malacari DA, Ridpath JF, Perez-Aguirreburualde MS, Combessies G, Odeón AC, Romera SA, Golemba MD, Wigdorovitz A. First finding of genetic and antigenic diversity in 1b-BVDV isolates from Argentina. Res Vet Sci. 2014;96:204–12.
Article
CAS
PubMed
Google Scholar
Graham DA, McLaren IE, Brittain D, O’Reilly PJ. Genetic typing of ruminant pestivirus strains from Northern Ireland and the Republic of Ireland. Res Vet Sci. 2001;71:127–34.
Article
CAS
PubMed
Google Scholar
O’Brien E. Genetic typing of bovine viral diarrhoea virus in cattle on Irish farms. MVM thesis, University of Limerik; 2015.
Edgar RC. MUSCLE: a multiple sequence aligment method with reduced time and space complexity. BMC Bioinformatics. 2004;5:113.
Article
PubMed
PubMed Central
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980;16:111–20.
Article
CAS
PubMed
Google Scholar
Strong R, Errington J, Cook R, Ross-Smith N, Wakeley P, Steinbach F. Increased phylogenetic diversity of bovine viral diarrhoea virus type 1 isolates in England and Wales since 2001. Vet Microbiol. 2013;162:315–20.
Article
CAS
PubMed
Google Scholar
Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 1985;39:783–91.
Article
Google Scholar
Strong R, La Rocca SA, Ibata G, Sandvik T. Antigenic and genetic characterisation of border disease viruses isolated from UK cattle. Vet Microbiol. 2010;141:208–15.
Article
CAS
PubMed
Google Scholar
Vilcek S, Drew TW, McGoldrick A, Paton DJ. Genetic typing of bovine pestiviruses from England and Wales. Vet Microbiol. 1999;69:227–37.
Article
CAS
PubMed
Google Scholar
Booth RE, Thomas CJ, El-Attar LMR, Gunn GJ, Brownlie J. A phylogenetic analysis of Bovine Viral Diarrhoea Virus (BVDV) isolates from six different regions of the UK and links to animal movement data. Vet Res. 2013;44:43.
Article
PubMed
PubMed Central
Google Scholar
Kuta A, Polak MP, Larska M, Zmudziński JF. Predominance of bovine viral diarrhea virus 1b and 1d subtypes during eight years of survey in Poland. Vet Microbiol. 2013;166:639–44.
Article
CAS
PubMed
Google Scholar
van Rijn PA, van Gennip HG, Leendertse CH, Bruschke CJ, Paton DJ, Moormann RJ, van Oirschot JT. Subdivision of the pestivirus genus based on envelope glycoprotein E2. Virology. 1997;237:337–48.
Article
PubMed
Google Scholar
Barros SC, Ramos F, Pauperio S, Thompson G, Fevereiro M. Phylogenetic analysis of Portuguese bovine viral diarrhoea virus. Virus Res. 2006;118:192–5.
Article
CAS
PubMed
Google Scholar
Giammarioli M, La Rocca SA, Steinbach F, Casciari C, De Mia GM. Genetic and antigenic typing of border disease virus (BDV) isolates from Italy reveals the existence of a novel BDV group. Vet Microbiol. 2011;147:231–6.
Article
CAS
PubMed
Google Scholar
Hurtado A, Garci AL, Aduriz G, Juste RA. Genetic diversity of ruminant pesti viruses from Spain. Virus Res. 2003;92:67–73.
Article
CAS
PubMed
Google Scholar
Braun U, Reichle SF, Reichert C, Hässig M, Stalder HP, Bachofen C, Peterhans E. Sheep persistently infected with Border disease readily transmit virus to calves seronegative to BVD virus. Vet Microbiol. 2014;168:98–104.
Article
CAS
PubMed
Google Scholar
Stahl K, Kampa J, Baule C, Isaksson M, Moreno-Lopez J, Belak S, Alenius S, Lindberg A. Molecular epidemiology of bovine viral diarrhoea during the final phase of the Swedish BVD-eradication programme. Prev Vet Med. 2005;72:103–8.
Article
PubMed
Google Scholar